- Python 2.7.13
- rust 1.28.0
- clang 6.0
- go 1.11
- node v8.11.4
sudo apt-get install make clang-6.0 golang-1.11-go libz-dev libbz2-dev liblzma-dev # Add golang to path export PATH=/usr/lib/go-1.11/bin:$PATH # Install rustup from https://www.rustup.rs/ . Then: rustup install 1.28.0 rustup default 1.28.0
- Binary dependencies can be found in the Ranger 3.0.2 package (https://support.10xgenomics.com/developers/software/downloads/latest)
- The Ranger package includes a build of the Martian platform (v3.2.0), which is open source. For more information, go to http://martian-lang.org/ .
# Setup Martian and binary dependencies source /path/to/ranger/sourceme.bash # Setup Cell Ranger source /path/to/cellranger/sourceme.bash
The binaries required to generate Loupe Cell Browser (.cloupe) and Loupe V(D)J Browser files (.vloupe) are not included in this repository or in the binary dependencies package Ranger. The necessary binaries can be obtained from an existing binary version of Cell Ranger by running: cp /path/to/cellranger-3.0.2/cellranger-cs/*/lib/bin/ /path/to/open-source-cellranger/lib/bin/
We do not provide support for building and running this code.
The officially supported release binaries are available at: (https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest)